Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs13409529 | chr2:240848571 | C/G | 9.39E-6 | 178 | 4.47 | 14.33 | 15.77 | KM Plot |
| PAAD | rs13417588 | chr2:217894998 | A/G | 9.08E-5 | 178 | 16.08 | 14.33 | 7.2 | KM Plot |
| PAAD | rs13425086 | chr2:38893184 | G/A | 1.12E-6 | 178 | 15.87 | 14.17 | 3.43 | KM Plot |
| PAAD | rs137885952 | chr19:49355124 | C/G | 1.22E-12 | 174 | 16.17 | 12.87 | 1.37 | KM Plot |
| PAAD | rs1379 | chr16:8743227 | T/C | 0.000157 | 178 | 15.6 | 15.5 | 4.93 | KM Plot |
| PAAD | rs137988929 | chr2:128593749 | T/C | 9.26E-10 | 177 | 15.62 | 12.87 | 2.2 | KM Plot |
| PAAD | rs138152403 | chr1:227578790 | G/A | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs138168407 | chr2:70446371 | GGGA/G | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs138200352 | chr1:227272090 | G/A | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs138281121 | chr19:49366827 | G/A | 7.3E-13 | 176 | 16.28 | 12.6 | 1.37 | KM Plot |
| PAAD | rs138321874 | chr1:227283520 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs138660628 | chr3:120727778 | AT/A | 1.37E-8 | 177 | 15.57 | 13.47 | 3.17 | KM Plot |
| PAAD | rs138682285 | chr2:54549942 | C/T | 7.59E-8 | 174 | 14.9 | 20.47 | 3.43 | KM Plot |
| PAAD | rs138774150 | chr6:44873161 | CA/C | 0.000119 | 174 | 16.07 | 16.17 | 11.98 | KM Plot |
| PAAD | rs138824220 | chr1:16822459 | C/T | 1.17E-5 | 170 | 15.43 | 16.03 | 4.62 | KM Plot |